J3_4V8Z_006
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 4V8Z|1|B2|G|1199, 4V8Z|1|B2|G|1201, 4V8Z|1|B2|A|1203
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8Z_006 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.0709
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4V8Z|1|B2|C|1180
4V8Z|1|B2|U|1181
4V8Z|1|B2|U|1182
4V8Z|1|B2|A|1183
4V8Z|1|B2|A|1184
4V8Z|1|B2|U|1185
4V8Z|1|B2|U|1186
4V8Z|1|B2|U|1187
*
4V8Z|1|B2|G|1198
4V8Z|1|B2|G|1199
4V8Z|1|B2|G|1200
4V8Z|1|B2|G|1201
4V8Z|1|B2|A|1202
4V8Z|1|B2|A|1203
4V8Z|1|B2|A|1204
4V8Z|1|B2|C|1205
4V8Z|1|B2|U|1206
4V8Z|1|B2|C|1207
4V8Z|1|B2|A|1208
4V8Z|1|B2|C|1209
*
4V8Z|1|B2|G|1454
4V8Z|1|B2|G|1455
4V8Z|1|B2|C|1456
4V8Z|1|B2|C|1457
4V8Z|1|B2|G|1458
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain A3
- 40S RIBOSOMAL PROTEIN S29-A
- Chain A7
- SUPPRESSOR PROTEIN STM1
- Chain AP
- 40S RIBOSOMAL PROTEIN S15
- Chain AS
- 40S RIBOSOMAL PROTEIN S18-A
- Chain AU
- 40S RIBOSOMAL PROTEIN S20
- Chain CW
- Transfer RNA; tRNA
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