J3_4V90_007

3D structure

PDB id

4V90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGC*GGACUGC*GAGGAAGGAG

Length

20 nucleotides

Bulged bases

4V90|1|AA|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V90_007 not in the Motif Atlas

Homologous match to J3_4LFB_018

Geometric discrepancy: 0.0817

The information below is about J3_4LFB_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17791.2

Basepair signature

cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V90|1|AA|C|1116
4V90|1|AA|G|1117
4V90|1|AA|C|1118
*
4V90|1|AA|G|1155
4V90|1|AA|G|1156
4V90|1|AA|A|1157
4V90|1|AA|C|1158
4V90|1|AA|U|1159
4V90|1|AA|G|1160
4V90|1|AA|C|1161
*
4V90|1|AA|G|1175
4V90|1|AA|A|1176
4V90|1|AA|G|1177
4V90|1|AA|G|1178
4V90|1|AA|A|1179
4V90|1|AA|A|1180
4V90|1|AA|G|1181
4V90|1|AA|G|1182
4V90|1|AA|A|1183
4V90|1|AA|G|1184

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AB

30S RIBOSOMAL PROTEIN S2

Chain AI

30S RIBOSOMAL PROTEIN S9

Chain AN

30S RIBOSOMAL PROTEIN S14 TYPE Z