J3_4V90_026

3D structure

PDB id

4V90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

4V90|1|BA|U|448, 4V90|1|BA|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V90_026 not in the Motif Atlas

Homologous match to J3_9DFE_003

Geometric discrepancy: 0.0703

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

4V90|1|BA|C|32
4V90|1|BA|U|33
4V90|1|BA|C|34
4V90|1|BA|G|35
*
4V90|1|BA|C|445
4V90|1|BA|G|446
4V90|1|BA|A|447
4V90|1|BA|U|448
4V90|1|BA|A|449
4V90|1|BA|G|450
4V90|1|BA|C|451
4V90|1|BA|G|452
4V90|1|BA|C|453
4V90|1|BA|A|454
4V90|1|BA|C|455
4V90|1|BA|C|456
4V90|1|BA|A|457
4V90|1|BA|G|458
4V90|1|BA|U|459
4V90|1|BA|A|460
4V90|1|BA|C|461
*
4V90|1|BA|G|468
4V90|1|BA|G|469
4V90|1|BA|A|470
4V90|1|BA|A|471
4V90|1|BA|A|472
4V90|1|BA|G|473

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B7

50S RIBOSOMAL PROTEIN L34

Chain BF

50S RIBOSOMAL PROTEIN L4

Chain BU

50S RIBOSOMAL PROTEIN L20

Chain BX

50S RIBOSOMAL PROTEIN L23