J3_4V90_029

3D structure

PDB id

4V90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

4V90|1|BA|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V90_029 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0601

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4V90|1|BA|C|297
4V90|1|BA|G|298
4V90|1|BA|A|299
4V90|1|BA|A|300
4V90|1|BA|G|301
*
4V90|1|BA|C|316
4V90|1|BA|G|317
4V90|1|BA|C|318
4V90|1|BA|C|319
4V90|1|BA|A|320
4V90|1|BA|G|321
4V90|1|BA|A|322
4V90|1|BA|G|323
4V90|1|BA|A|324
4V90|1|BA|G|325
*
4V90|1|BA|C|337
4V90|1|BA|G|338
4V90|1|BA|U|339
4V90|1|BA|A|340
4V90|1|BA|G|341

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BF

50S RIBOSOMAL PROTEIN L4

Chain BY

50S RIBOSOMAL PROTEIN L24