J3_4V91_011

3D structure

PDB id

4V91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAU*AGAUG*CUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V91_011 not in the Motif Atlas

Homologous match to J3_5TBW_015

Geometric discrepancy: 0.0967

The information below is about J3_5TBW_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_48314.1

Basepair signature

cWW-cWW-F-cWW-F-cWW-F

Number of instances in this motif group

1

Unit IDs

4V91|1|1|C|3298
4V91|1|1|A|3299
4V91|1|1|U|3300
*
4V91|1|1|A|3314
4V91|1|1|G|3315
4V91|1|1|A|3316
4V91|1|1|U|3317
4V91|1|1|G|3318
*
4V91|1|1|C|3388
4V91|1|1|U|3389
4V91|1|1|G|3390

Current chains

Chain 1

25S RRNA

Nearby chains

Chain B

UL3

Chain P

UL22

Chain d

EL31