J3_4V91_013
3D structure
- PDB id
- 4V91 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 4V91|1|1|U|343, 4V91|1|1|A|351, 4V91|1|4|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V91_013 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0664
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
4V91|1|1|C|340
4V91|1|1|G|341
4V91|1|1|A|342
4V91|1|1|U|343
4V91|1|1|A|344
4V91|1|1|G|345
4V91|1|1|C|346
4V91|1|1|G|347
4V91|1|1|A|348
4V91|1|1|A|349
4V91|1|1|C|350
4V91|1|1|A|351
4V91|1|1|A|352
4V91|1|1|G|353
4V91|1|1|U|354
4V91|1|1|A|355
4V91|1|1|C|356
*
4V91|1|1|G|363
4V91|1|1|G|364
4V91|1|1|A|365
4V91|1|1|A|366
4V91|1|1|A|367
4V91|1|1|G|368
*
4V91|1|4|C|21
4V91|1|4|U|22
4V91|1|4|U|23
4V91|1|4|G|24
Current chains
- Chain 1
- 25S RRNA
- Chain 4
- 5.8S RRNA
Nearby chains
- Chain C
- UL4
- Chain Y
- UL24
- Chain j
- EL37
- Chain l
- EL39
Coloring options: