J3_4V91_024

3D structure

PDB id

4V91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA

Length

30 nucleotides

Bulged bases

4V91|1|1|A|3172, 4V91|1|1|G|3173, 4V91|1|1|A|3215, 4V91|1|1|G|3216, 4V91|1|1|C|3217, 4V91|1|1|G|3219, 4V91|1|1|A|3268, 4V91|1|1|U|3270, 4V91|1|1|C|3272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V91_024 not in the Motif Atlas

Homologous match to J3_8P9A_064

Geometric discrepancy: 0.1742

The information below is about J3_8P9A_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03190.1

Basepair signature

cWW-F-F-F-F-F-F-F-cWW-F-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

4V91|1|1|U|3171
4V91|1|1|A|3172
4V91|1|1|G|3173
4V91|1|1|A|3174
4V91|1|1|U|3175
4V91|1|1|G|3176
*
4V91|1|1|C|3212
4V91|1|1|A|3213
4V91|1|1|U|3214
4V91|1|1|A|3215
4V91|1|1|G|3216
4V91|1|1|C|3217
4V91|1|1|A|3218
4V91|1|1|G|3219
4V91|1|1|G|3220
*
4V91|1|1|C|3265
4V91|1|1|G|3266
4V91|1|1|A|3267
4V91|1|1|A|3268
4V91|1|1|U|3269
4V91|1|1|U|3270
4V91|1|1|G|3271
4V91|1|1|C|3272
4V91|1|1|A|3273
4V91|1|1|A|3274
4V91|1|1|U|3275
4V91|1|1|G|3276
4V91|1|1|U|3277
4V91|1|1|C|3278
4V91|1|1|A|3279

Current chains

Chain 1

25S RRNA

Nearby chains

Chain E

EL6

Chain M

EL14

Chain O

UL13

Chain P

UL22

Chain f

EL33