J3_4V92_016
3D structure
- PDB id
- 4V92 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCACC*GGGCCG
- Length
- 27 nucleotides
- Bulged bases
- 4V92|1|A2|G|1199, 4V92|1|A2|G|1201, 4V92|1|A2|A|1203, 4V92|1|A2|C|1457
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V92_016 not in the Motif Atlas
- Geometric match to J3_6CZR_062
- Geometric discrepancy: 0.244
- The information below is about J3_6CZR_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_59791.1
- Basepair signature
- cWW-F-F-F-F-F-tSS-F-F-F-F-F-F-F-F-F-F-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
4V92|1|A2|C|1180
4V92|1|A2|U|1181
4V92|1|A2|U|1182
4V92|1|A2|A|1183
4V92|1|A2|A|1184
4V92|1|A2|U|1185
4V92|1|A2|U|1186
4V92|1|A2|U|1187
*
4V92|1|A2|G|1198
4V92|1|A2|G|1199
4V92|1|A2|G|1200
4V92|1|A2|G|1201
4V92|1|A2|A|1202
4V92|1|A2|A|1203
4V92|1|A2|A|1204
4V92|1|A2|C|1205
4V92|1|A2|U|1206
4V92|1|A2|C|1207
4V92|1|A2|A|1208
4V92|1|A2|C|1209
4V92|1|A2|C|1210
*
4V92|1|A2|G|1453
4V92|1|A2|G|1454
4V92|1|A2|G|1455
4V92|1|A2|C|1456
4V92|1|A2|C|1457
4V92|1|A2|G|1458
Current chains
- Chain A2
- 18S RRNA
Nearby chains
- Chain AZ
- Cripavirus internal ribosome entry site (IRES); CrPV IRES
- Chain BP
- US19
- Chain BS
- US13
- Chain BT
- ES19
- Chain BU
- US10
- Chain Bd
- US14
Coloring options: