J3_4V92_021

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V92_021 not in the Motif Atlas

Homologous match to J3_8P9A_077

Geometric discrepancy: 0.2221

The information below is about J3_8P9A_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4V92|1|A2|U|1168
4V92|1|A2|G|1169
4V92|1|A2|G|1170
4V92|1|A2|A|1171
*
4V92|1|A2|U|1468
4V92|1|A2|A|1469
4V92|1|A2|C|1470
*
4V92|1|A2|G|1574
4V92|1|A2|G|1575
4V92|1|A2|A|1576
4V92|1|A2|A|1577

Current chains

Chain A2

18S RRNA

Nearby chains

Chain BF

US7

Chain BQ

US9

Chain BT

ES19