Motif J3_44359.1 Version J3_44359.1 of this group appears in releases 4.0 to 4.0

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4	break		5		6		7	break		8		9		10		11	1-11	2-10	3-6	4-5	7-8
1	J3_4LFB_003	4LFB	0.0910	0	A	SSU rRNA	U	943	G	944	G	945	A	946	*	U	1235	A	1236	C	1237	*	G	1337	G	1338	A	1339	A	1340	cWW	tSH	cWW	cWW	cWW
2	J3_8B0X_006	8B0X	0.0845	0	A	SSU rRNA	U	943	G	944	G	945	A	946	*	U	1235	A	1236	C	1237	*	G	1337	G	1338	A	1339	A	1340	cWW	tSH	cWW	cWW	cWW
3	J3_8CRE_079	8CRE	0.0801	0	CM	SSU rRNA	U	1153	G	1154	G	1155	A	1156	*	U	1454	A	1455	C	1456	*	G	1561	G	1562	A	1563	A	1564	cWW	tSH	cWW	cWW	cWW
4	J3_8GLP_017	8GLP	0.0000	0	S2	SSU rRNA	U	1225	G	1226	G	1227	A	1228	*	U	1530	A	1531	C	1532	*	G	1638	G7M	1639	A	1640	A	1641	cWW	tSH	cWW	cWW	cWW
5	J3_8P9A_077	8P9A	0.0823	0	sR	SSU rRNA	U	1168	G	1169	G	1170	A	1171	*	U	1468	A	1469	C	1470	*	G	1574	G	1575	A	1576	A	1577	cWW	tSH	cWW	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UGGAUACGGAA	4
UGGAUACG(G7M)AA	1

Non-Watson-Crick part of the motif

Sequence	Counts
GGAGA	4
GGA(G7M)A	1

Release history

Release	4.0
Date	2025-08-13
Status	New id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (5)
Basepair signature: cWW-tSH-cWW-F-cWW-cWW
Heat map statistics: Min 0.07 | Avg 0.08 | Max 0.12

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Coloring options: Nucleotide numbers

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