J3_4V9B_039

3D structure

PDB id

4V9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tigecycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGGC*GCUAGA*UGACG

Length

15 nucleotides

Bulged bases

4V9B|1|AA|A|653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9B_039 not in the Motif Atlas

Geometric match to J3_1G1X_006

Geometric discrepancy: 0.1912

The information below is about J3_1G1X_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4V9B|1|AA|C|586
4V9B|1|AA|G|587
4V9B|1|AA|G|588
4V9B|1|AA|C|589
*
4V9B|1|AA|G|650
4V9B|1|AA|C|651
4V9B|1|AA|U|652
4V9B|1|AA|A|653
4V9B|1|AA|G|654
4V9B|1|AA|A|655
*
4V9B|1|AA|U|751
4V9B|1|AA|G|752
4V9B|1|AA|A|753
4V9B|1|AA|C|754
4V9B|1|AA|G|755

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AK

30S RIBOSOMAL PROTEIN S8

Chain AO

30S RIBOSOMAL PROTEIN S12

Chain AR

30S RIBOSOMAL PROTEIN S15

Chain AT

30S RIBOSOMAL PROTEIN S17