J3_4V9C_007

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UAU*AGAC*GGUG

Length

11 nucleotides

Bulged bases

4V9C|1|AA|U|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9C_007 not in the Motif Atlas

Homologous match to J3_5J7L_010

Geometric discrepancy: 0.1781

The information below is about J3_5J7L_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82365.4

Basepair signature

cWW-F-cWW-cWW-F-F

Number of instances in this motif group

4

Unit IDs

4V9C|1|AA|U|1116
4V9C|1|AA|A|1117
4V9C|1|AA|U|1118
*
4V9C|1|AA|A|1155
4V9C|1|AA|G|1156
4V9C|1|AA|A|1157
4V9C|1|AA|C|1158
*
4V9C|1|AA|G|1181
4V9C|1|AA|G|1182
4V9C|1|AA|U|1183
4V9C|1|AA|G|1184

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AI

30S ribosomal protein S9

Chain AJ

30S ribosomal protein S10

Chain AN

30S ribosomal protein S14