J3_4V9C_015

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUAAUC*GAGGUUAG*CAUAAG

Length

20 nucleotides

Bulged bases

4V9C|1|BA|U|2334

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9C|1|BA|C|2295
4V9C|1|BA|U|2296
4V9C|1|BA|A|2297
4V9C|1|BA|A|2298
4V9C|1|BA|U|2299
4V9C|1|BA|C|2300
*
4V9C|1|BA|G|2316
4V9C|1|BA|A|2317
4V9C|1|BA|G|2318
4V9C|1|BA|G|2319
4V9C|1|BA|U|2320
4V9C|1|BA|U|2321
4V9C|1|BA|A|2322
4V9C|1|BA|G|2323
*
4V9C|1|BA|C|2332
4V9C|1|BA|A|2333
4V9C|1|BA|U|2334
4V9C|1|BA|A|2335
4V9C|1|BA|A|2336
4V9C|1|BA|G|2337

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AV

Transfer RNA; tRNA

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BF

50S ribosomal protein L5

Chain BO

50S ribosomal protein L18

Chain BW

50S ribosomal protein L27