J3_4V9C_016

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

4V9C|1|BA|A|2518, 4V9C|1|BA|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9C_016 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0974

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

4V9C|1|BA|C|2517
4V9C|1|BA|A|2518
4V9C|1|BA|U|2519
4V9C|1|BA|C|2520
*
4V9C|1|BA|G|2545
4V9C|1|BA|U|2546
4V9C|1|BA|A|2547
*
4V9C|1|BA|U|2561
4V9C|1|BA|U|2562
4V9C|1|BA|U|2563
4V9C|1|BA|A|2564
4V9C|1|BA|A|2565
4V9C|1|BA|A|2566
4V9C|1|BA|G|2567

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BK

50S ribosomal protein L14