J3_4V9C_018
3D structure
- PDB id
- 4V9C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Allosteric control of the ribosome by small-molecule antibiotics
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GCCGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 4V9C|1|BB|A|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V9C_018 not in the Motif Atlas
- Geometric match to J3_5J7L_049
- Geometric discrepancy: 0.2887
- The information below is about J3_5J7L_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89095.1
- Basepair signature
- cWW-F-F-F-tHS-F-cWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
4V9C|1|BB|G|10
4V9C|1|BB|C|11
4V9C|1|BB|C|12
4V9C|1|BB|G|13
4V9C|1|BB|U|14
4V9C|1|BB|A|15
4V9C|1|BB|G|16
*
4V9C|1|BB|C|68
4V9C|1|BB|G|69
4V9C|1|BB|C|70
*
4V9C|1|BB|G|106
4V9C|1|BB|G|107
4V9C|1|BB|A|108
4V9C|1|BB|A|109
4V9C|1|BB|C|110
Current chains
- Chain BB
- 5S ribosomal RNA
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BO
- 50S ribosomal protein L18
- Chain BV
- 50S ribosomal protein L25
- Chain BW
- 50S ribosomal protein L27
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