J3_4V9C_050

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

4V9C|1|BA|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9C_050 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0762

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4V9C|1|BA|G|297
4V9C|1|BA|G|298
4V9C|1|BA|A|299
4V9C|1|BA|A|300
4V9C|1|BA|G|301
*
4V9C|1|BA|C|316
4V9C|1|BA|G|317
4V9C|1|BA|C|318
4V9C|1|BA|G|319
4V9C|1|BA|A|320
4V9C|1|BA|U|321
4V9C|1|BA|A|322
4V9C|1|BA|C|323
4V9C|1|BA|A|324
4V9C|1|BA|G|325
*
4V9C|1|BA|C|337
4V9C|1|BA|G|338
4V9C|1|BA|U|339
4V9C|1|BA|A|340
4V9C|1|BA|C|341

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BU

50S ribosomal protein L24