J3_4V9C_054

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUG*CUAACG*CGGACAG

Length

16 nucleotides

Bulged bases

4V9C|1|BA|A|2198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9C_054 not in the Motif Atlas

Homologous match to J3_4WF9_007

Geometric discrepancy: 0.1838

The information below is about J3_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07703.1

Basepair signature

cWW-cWW-tSH-F-F-F-F-F-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

4V9C|1|BA|C|2091
4V9C|1|BA|U|2092
4V9C|1|BA|G|2093
*
4V9C|1|BA|C|2196
4V9C|1|BA|U|2197
4V9C|1|BA|A|2198
4V9C|1|BA|A|2199
4V9C|1|BA|C|2200
4V9C|1|BA|G|2201
*
4V9C|1|BA|C|2222
4V9C|1|BA|G|2223
4V9C|1|BA|G|2224
4V9C|1|BA|A|2225
4V9C|1|BA|C|2226
4V9C|1|BA|A|2227
4V9C|1|BA|G|2228

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2

Chain BH

50S ribosomal protein L9

Chain BX

50S ribosomal protein L28