J3_4V9C_057

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCCGUAGC*GCGC*GGAAC

Length

17 nucleotides

Bulged bases

4V9C|1|BB|U|14, 4V9C|1|BB|A|108

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9C|1|BB|G|10
4V9C|1|BB|C|11
4V9C|1|BB|C|12
4V9C|1|BB|G|13
4V9C|1|BB|U|14
4V9C|1|BB|A|15
4V9C|1|BB|G|16
4V9C|1|BB|C|17
*
4V9C|1|BB|G|67
4V9C|1|BB|C|68
4V9C|1|BB|G|69
4V9C|1|BB|C|70
*
4V9C|1|BB|G|106
4V9C|1|BB|G|107
4V9C|1|BB|A|108
4V9C|1|BB|A|109
4V9C|1|BB|C|110

Current chains

Chain BB

5S ribosomal RNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BO

50S ribosomal protein L18

Chain BV

50S ribosomal protein L25

Chain BW

50S ribosomal protein L27