J3_4V9D_023

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

4V9D|1|CA|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9D_023 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.1116

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

4V9D|1|CA|C|1306
4V9D|1|CA|A|1307
4V9D|1|CA|A|1308
4V9D|1|CA|G|1309
*
4V9D|1|CA|C|1605
4V9D|1|CA|C|1606
4V9D|1|CA|C|1607
4V9D|1|CA|A|1608
4V9D|1|CA|A|1609
4V9D|1|CA|A|1610
4V9D|1|CA|C|1611
*
4V9D|1|CA|G|1620
4V9D|1|CA|U|1621
4V9D|1|CA|G|1622

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C2

50S ribosomal protein L34