J3_4V9D_049

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9D_049 not in the Motif Atlas

Geometric match to J3_8C3A_082

Geometric discrepancy: 0.2233

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

4V9D|1|BA|G|46
4V9D|1|BA|C|47
*
4V9D|1|BA|G|361
4V9D|1|BA|G|362
4V9D|1|BA|A|363
4V9D|1|BA|A|364
4V9D|1|BA|U|365
4V9D|1|BA|A|366
4V9D|1|BA|U|367
*
4V9D|1|BA|A|393
4V9D|1|BA|G|394
4V9D|1|BA|C|395

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BL

30S ribosomal protein S12

Chain BP

30S ribosomal protein S16

Chain CH

50S ribosomal protein L9