J3_4V9D_069

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9D_069 not in the Motif Atlas

Geometric match to J3_8VTW_036

Geometric discrepancy: 0.0765

The information below is about J3_8VTW_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69021.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

7

Unit IDs

4V9D|1|DA|G|30
4V9D|1|DA|C|31
*
4V9D|1|DA|G|474
4V9D|1|DA|C|475
4V9D|1|DA|G|476
4V9D|1|DA|A|477
4V9D|1|DA|A|478
4V9D|1|DA|A|479
4V9D|1|DA|A|480
4V9D|1|DA|G|481
*
4V9D|1|DA|C|509
4V9D|1|DA|C|510

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DQ

50S ribosomal protein L20

Chain DU

50S ribosomal protein L24