J3_4V9D_070

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

4V9D|1|DA|A|504, 4V9D|1|DA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9D_070 not in the Motif Atlas

Homologous match to J3_5J7L_066

Geometric discrepancy: 0.0744

The information below is about J3_5J7L_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V9D|1|DA|G|30
4V9D|1|DA|C|31
*
4V9D|1|DA|G|474
4V9D|1|DA|C|475
4V9D|1|DA|G|476
4V9D|1|DA|A|477
4V9D|1|DA|A|478
4V9D|1|DA|A|479
4V9D|1|DA|A|480
4V9D|1|DA|G|481
4V9D|1|DA|A|482
4V9D|1|DA|A|483
4V9D|1|DA|C|484
*
4V9D|1|DA|G|496
4V9D|1|DA|A|497
4V9D|1|DA|G|498
4V9D|1|DA|U|499
4V9D|1|DA|G|500
4V9D|1|DA|A|501
4V9D|1|DA|A|502
4V9D|1|DA|A|503
4V9D|1|DA|A|504
4V9D|1|DA|A|505
4V9D|1|DA|G|506
4V9D|1|DA|A|507
4V9D|1|DA|A|508
4V9D|1|DA|C|509
4V9D|1|DA|C|510

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DQ

50S ribosomal protein L20

Chain DS

50S ribosomal protein L22

Chain DU

50S ribosomal protein L24