J3_4V9D_084

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

4V9D|1|BA|U|1086

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9D_084 not in the Motif Atlas

Homologous match to J3_5J7L_009

Geometric discrepancy: 0.1579

The information below is about J3_5J7L_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

4V9D|1|BA|U|1073
4V9D|1|BA|G|1074
*
4V9D|1|BA|U|1083
4V9D|1|BA|G|1084
4V9D|1|BA|U|1085
4V9D|1|BA|U|1086
4V9D|1|BA|G|1087
*
4V9D|1|BA|C|1098
4V9D|1|BA|G|1099
4V9D|1|BA|C|1100
4V9D|1|BA|A|1101
4V9D|1|BA|A|1102

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BB

30S ribosomal protein S2

Chain BE

30S ribosomal protein S5