J3_4V9F_001

3D structure

PDB id

4V9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CAAAC*GUGUCAG*CAG

Length

15 nucleotides

Bulged bases

4V9F|1|0|A|272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_06335.1

Basepair signature

cWW-F-F-tSH-cSS-tWH-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

4V9F|1|0|C|240
4V9F|1|0|A|241
4V9F|1|0|A|242
4V9F|1|0|A|243
4V9F|1|0|C|244
*
4V9F|1|0|G|267
4V9F|1|0|U|268
4V9F|1|0|G|269
4V9F|1|0|U|270
4V9F|1|0|C|271
4V9F|1|0|A|272
4V9F|1|0|G|273
*
4V9F|1|0|C|377
4V9F|1|0|A|378
4V9F|1|0|G|379

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L7Ae

Chain M

50S ribosomal protein L15e