J3_4V9F_009
3D structure
- PDB id
- 4V9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- CAUC*GUGA*UAUUAAAG
- Length
- 16 nucleotides
- Bulged bases
- 4V9F|1|0|A|2553, 4V9F|1|0|U|2554
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69441.1
- Basepair signature
- cWW-cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 1
Unit IDs
4V9F|1|0|C|2552
4V9F|1|0|A|2553
4V9F|1|0|U|2554
4V9F|1|0|C|2555
*
4V9F|1|0|G|2580
4V9F|1|0|U|2581
4V9F|1|0|G|2582
4V9F|1|0|A|2583
*
4V9F|1|0|U|2595
4V9F|1|0|A|2596
4V9F|1|0|U|2597
4V9F|1|0|U|2598
4V9F|1|0|A|2599
4V9F|1|0|A|2600
4V9F|1|0|A|2601
4V9F|1|0|G|2602
Current chains
- Chain 0
- 23S Ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3P
- Chain J
- 50S ribosomal protein L13P
- Chain K
- 50S ribosomal protein L14P
Coloring options: