Motif J3_68010.1 Version J3_68010.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-3 | 2-12 | 3-12 | 4-14 | 5-8 | 6-7 | 9-13 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_4V9F_009 | 4V9F | 0.0000 | 2 | 0 | LSU rRNA | C | 2552 | C | 2555 | * | G | 2580 | U | 2581 | G | 2582 | A | 2583 | * | U | 2595 | A | 2596 | U | 2597 | U | 2598 | A | 2599 | A | 2600 | A | 2601 | G | 2602 | cWW | cWW | csS | tsS | cWH | cWW | cWW | tWH |
| 2 | J3_9E6Q_017 | 9E6Q | 0.0717 | 2 | 1 | LSU rRNA | C | 2631 | C | 2634 | * | G | 2659 | U | 2660 | G | 2661 | G | 2662 | * | C | 2674 | A | 2675 | U | 2676 | U | 2677 | A | 2678 | A | 2679 | A | 2680 | G | 2681 | cWW | cWW | ncsS | tsS | cWH | cWW | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUC*GUGA*UAUUAAAG | 1 |
| CAUC*GUGG*CAUUAAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AU*UG*AUUAAA | 2 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-cWH-cWW-cSS-tWH-tSS-F-cWW-F-cWW
- Heat map statistics
- Min 0.07 | Avg 0.04 | Max 0.07
Coloring options: