J3_4V9F_018
3D structure
- PDB id
- 4V9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- GCC*GUCUAGCGAACC*GAUGAC
- Length
- 21 nucleotides
- Bulged bases
- 4V9F|1|0|A|2425, 4V9F|1|0|A|2463
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44792.1
- Basepair signature
- cWW-F-tHH-cWW-tHW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
4V9F|1|0|G|2316
4V9F|1|0|C|2317
4V9F|1|0|C|2318
*
4V9F|1|0|G|2421
4V9F|1|0|U|2422
4V9F|1|0|C|2423
4V9F|1|0|U|2424
4V9F|1|0|A|2425
4V9F|1|0|G|2426
4V9F|1|0|C|2427
4V9F|1|0|G|2428
4V9F|1|0|A|2429
4V9F|1|0|A|2430
4V9F|1|0|C|2431
4V9F|1|0|C|2432
*
4V9F|1|0|G|2459
4V9F|1|0|A|2460
4V9F|1|0|U|2461
4V9F|1|0|G|2462
4V9F|1|0|A|2463
4V9F|1|0|C|2464
Current chains
- Chain 0
- 23S Ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L44e
- Chain L
- 50S ribosomal protein L15P
- Chain Q
- 50S ribosomal protein L21e
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