J3_4V9I_009

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

4V9I|1|BA|G|732, 4V9I|1|BA|G|838

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9I_009 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.0895

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4V9I|1|BA|C|729
4V9I|1|BA|G|730
4V9I|1|BA|A|731
4V9I|1|BA|G|732
4V9I|1|BA|C|733
4V9I|1|BA|U|734
4V9I|1|BA|A|735
*
4V9I|1|BA|U|819
4V9I|1|BA|A|820
4V9I|1|BA|G|821
*
4V9I|1|BA|C|837
4V9I|1|BA|G|838
4V9I|1|BA|A|839
4V9I|1|BA|G|840

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L34

Chain BD

50S ribosomal protein L2