J3_4V9I_010

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9I_010 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0627

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

4V9I|1|BA|C|744
4V9I|1|BA|A|745
4V9I|1|BA|G|746
*
4V9I|1|BA|C|778
4V9I|1|BA|G|779
4V9I|1|BA|A|780
4V9I|1|BA|A|781
4V9I|1|BA|C|782
*
4V9I|1|BA|G|806
4V9I|1|BA|A|807
4V9I|1|BA|U|808
4V9I|1|BA|G|809

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L2