3D structure

PDB id
4V9I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CAAG*CGCAAAC*GUG
Length
14 nucleotides
Bulged bases
4V9I|1|BA|A|1654
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V9I_012 not in the Motif Atlas
Homologous match to J3_7RQB_008
Geometric discrepancy: 0.0601
The information below is about J3_7RQB_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_16623.1
Basepair signature
cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW
Number of instances in this motif group
2

Unit IDs

4V9I|1|BA|C|1351
4V9I|1|BA|A|1352
4V9I|1|BA|A|1353
4V9I|1|BA|G|1354
*
4V9I|1|BA|C|1650
4V9I|1|BA|G|1651
4V9I|1|BA|C|1652
4V9I|1|BA|A|1653
4V9I|1|BA|A|1654
4V9I|1|BA|A|1655
4V9I|1|BA|C|1656
*
4V9I|1|BA|G|1665
4V9I|1|BA|U|1666
4V9I|1|BA|G|1667

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B7
50S ribosomal protein L34

Coloring options:


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