J3_4V9I_012

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

4V9I|1|BA|A|1654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9I_012 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.0601

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

4V9I|1|BA|C|1351
4V9I|1|BA|A|1352
4V9I|1|BA|A|1353
4V9I|1|BA|G|1354
*
4V9I|1|BA|C|1650
4V9I|1|BA|G|1651
4V9I|1|BA|C|1652
4V9I|1|BA|A|1653
4V9I|1|BA|A|1654
4V9I|1|BA|A|1655
4V9I|1|BA|C|1656
*
4V9I|1|BA|G|1665
4V9I|1|BA|U|1666
4V9I|1|BA|G|1667

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L34