J3_4V9I_017

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9I_017 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0839

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

4V9I|1|CA|C|914
4V9I|1|CA|A|915
4V9I|1|CA|A|916
4V9I|1|CA|G|917
*
4V9I|1|CA|C|1326
4V9I|1|CA|U|1327
4V9I|1|CA|A|1328
4V9I|1|CA|G|1329
4V9I|1|CA|U|1330
4V9I|1|CA|A|1331
4V9I|1|CA|A|1332
*
4V9I|1|CA|U|1355
4V9I|1|CA|G|1356
4V9I|1|CA|A|1357
4V9I|1|CA|A|1358
4V9I|1|CA|U|1359
4V9I|1|CA|A|1360
4V9I|1|CA|C|1361
4V9I|1|CA|G|1362

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CG

30S Ribosomal protein S7

Chain CI

30S Ribosomal protein S9

Chain CW

Transfer RNA; tRNA