J3_4V9I_032

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GC*GGAAUCU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9I_032 not in the Motif Atlas

Geometric match to J3_4LFB_010

Geometric discrepancy: 0.0887

The information below is about J3_4LFB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V9I|1|AA|G|46
4V9I|1|AA|C|47
*
4V9I|1|AA|G|361
4V9I|1|AA|G|362
4V9I|1|AA|A|363
4V9I|1|AA|A|364
4V9I|1|AA|U|365
4V9I|1|AA|C|366
4V9I|1|AA|U|367
*
4V9I|1|AA|A|393
4V9I|1|AA|G|394
4V9I|1|AA|C|395

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AL

30S Ribosomal protein S12

Chain AP

30S Ribosomal protein S16