J3_4V9I_046
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GCC*GCCUAGUGAACC*GAUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 4V9I|1|BA|A|2399, 4V9I|1|BA|U|2401, 4V9I|1|BA|A|2437
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V9I_046 not in the Motif Atlas
- Homologous match to J3_9DFE_015
- Geometric discrepancy: 0.094
- The information below is about J3_9DFE_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4V9I|1|BA|G|2293
4V9I|1|BA|C|2294
4V9I|1|BA|C|2295
*
4V9I|1|BA|G|2395
4V9I|1|BA|C|2396
4V9I|1|BA|C|2397
4V9I|1|BA|U|2398
4V9I|1|BA|A|2399
4V9I|1|BA|G|2400
4V9I|1|BA|U|2401
4V9I|1|BA|G|2402
4V9I|1|BA|A|2403
4V9I|1|BA|A|2404
4V9I|1|BA|C|2405
4V9I|1|BA|C|2406
*
4V9I|1|BA|G|2432
4V9I|1|BA|A|2433
4V9I|1|BA|U|2434
4V9I|1|BA|C|2435
4V9I|1|BA|A|2436
4V9I|1|BA|A|2437
4V9I|1|BA|C|2438
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain AW
- Transfer RNA; tRNA
- Chain B0
- 50S ribosomal protein L27
- Chain B1
- 50S ribosomal protein L28
- Chain B6
- 50S ribosomal protein L33
- Chain B8
- 50S ribosomal protein L35
- Chain BP
- 50S ribosomal protein L15
Coloring options: