J3_4V9I_051

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGG*CUAG*CG

Length

9 nucleotides

Bulged bases

4V9I|1|CA|A|637

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9I_051 not in the Motif Atlas

Geometric match to J3_4LFB_011

Geometric discrepancy: 0.0798

The information below is about J3_4LFB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_56052.5

Basepair signature

cWW-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V9I|1|CA|C|570
4V9I|1|CA|G|571
4V9I|1|CA|G|572
*
4V9I|1|CA|C|635
4V9I|1|CA|U|636
4V9I|1|CA|A|637
4V9I|1|CA|G|638
*
4V9I|1|CA|C|738
4V9I|1|CA|G|739

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CH

30S Ribosomal protein S8

Chain CL

30S Ribosomal protein S12

Chain CO

30S Ribosomal protein S15

Chain CQ

30S Ribosomal protein S17