3D structure

PDB id
4V9I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
UG*UGUUG*CGCAA
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V9I_055 not in the Motif Atlas
Homologous match to J3_6CZR_024
Geometric discrepancy: 0.1264
The information below is about J3_6CZR_024
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_04260.1
Basepair signature
cWW-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

4V9I|1|CA|U|1056
4V9I|1|CA|G|1057
*
4V9I|1|CA|U|1066
4V9I|1|CA|G|1067
4V9I|1|CA|U|1068
4V9I|1|CA|U|1069
4V9I|1|CA|G|1070
*
4V9I|1|CA|C|1081
4V9I|1|CA|G|1082
4V9I|1|CA|C|1083
4V9I|1|CA|A|1084
4V9I|1|CA|A|1085

Current chains

Chain CA
16S ribosomal RNA

Nearby chains

Chain CB
30S Ribosomal protein S2
Chain CE
30S Ribosomal protein S5

Coloring options:


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