J3_4V9I_055
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UG*UGUUG*CGCAA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V9I_055 not in the Motif Atlas
- Homologous match to J3_6CZR_024
- Geometric discrepancy: 0.1264
- The information below is about J3_6CZR_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04260.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V9I|1|CA|U|1056
4V9I|1|CA|G|1057
*
4V9I|1|CA|U|1066
4V9I|1|CA|G|1067
4V9I|1|CA|U|1068
4V9I|1|CA|U|1069
4V9I|1|CA|G|1070
*
4V9I|1|CA|C|1081
4V9I|1|CA|G|1082
4V9I|1|CA|C|1083
4V9I|1|CA|A|1084
4V9I|1|CA|A|1085
Current chains
- Chain CA
- 16S ribosomal RNA
Nearby chains
- Chain CB
- 30S Ribosomal protein S2
- Chain CE
- 30S Ribosomal protein S5
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