J3_4V9I_056
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CGGAUAG*CAGGGGAUUGAAAAUCCCCGUGUCC*GUCCG
- Length
- 37 nucleotides
- Bulged bases
- 4V9I|1|CW|U|8, 4V9I|1|CW|U|47, 4V9I|1|CW|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V9I|1|CW|C|4
4V9I|1|CW|G|5
4V9I|1|CW|G|6
4V9I|1|CW|A|7
4V9I|1|CW|U|8
4V9I|1|CW|A|9
4V9I|1|CW|G|10
*
4V9I|1|CW|C|25
4V9I|1|CW|A|26
4V9I|1|CW|G|27
4V9I|1|CW|G|28
4V9I|1|CW|G|29
4V9I|1|CW|G|30
4V9I|1|CW|A|31
4V9I|1|CW|U|32
4V9I|1|CW|U|33
4V9I|1|CW|G|34
4V9I|1|CW|A|35
4V9I|1|CW|A|36
4V9I|1|CW|A|37
4V9I|1|CW|A|38
4V9I|1|CW|U|39
4V9I|1|CW|C|40
4V9I|1|CW|C|41
4V9I|1|CW|C|42
4V9I|1|CW|C|43
4V9I|1|CW|G|44
4V9I|1|CW|U|45
4V9I|1|CW|G|46
4V9I|1|CW|U|47
4V9I|1|CW|C|48
4V9I|1|CW|C|49
*
4V9I|1|CW|G|65
4V9I|1|CW|U|66
4V9I|1|CW|C|67
4V9I|1|CW|C|68
4V9I|1|CW|G|69
Current chains
- Chain CW
- E-SITE tRNA
Nearby chains
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
- Chain CG
- 30S Ribosomal protein S7
- Chain CK
- 30S Ribosomal protein S11
- Chain CV
- Transfer RNA; tRNA
- Chain D6
- 50S ribosomal protein L33
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: