J3_4V9I_060

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AC*GAUAAGC*GAUGU

Length

14 nucleotides

Bulged bases

4V9I|1|DA|U|70, 4V9I|1|DA|A|72

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9I_060 not in the Motif Atlas

Homologous match to J3_9DFE_004

Geometric discrepancy: 0.1192

The information below is about J3_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

4V9I|1|DA|A|54
4V9I|1|DA|C|55
*
4V9I|1|DA|G|68
4V9I|1|DA|A|69
4V9I|1|DA|U|70
4V9I|1|DA|A|71
4V9I|1|DA|A|72
4V9I|1|DA|G|73
4V9I|1|DA|C|74
*
4V9I|1|DA|G|107
4V9I|1|DA|A|108
4V9I|1|DA|U|109
4V9I|1|DA|G|110
4V9I|1|DA|U|111

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D2

50S ribosomal protein L29

Chain D7

50S ribosomal protein L34

Chain DX

50S ribosomal protein L23