J3_4V9J_019
3D structure
- PDB id
- 4V9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.86 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 4V9J|1|CA|A|975, 4V9J|1|CA|G|976, 4V9J|1|CA|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V9J_019 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.1835
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4V9J|1|CA|U|955
4V9J|1|CA|U|956
4V9J|1|CA|U|957
4V9J|1|CA|A|958
4V9J|1|CA|A|959
4V9J|1|CA|U|960
4V9J|1|CA|U|961
4V9J|1|CA|C|962
*
4V9J|1|CA|G|973
4V9J|1|CA|A|974
4V9J|1|CA|A|975
4V9J|1|CA|G|976
4V9J|1|CA|A|977
4V9J|1|CA|A|978
4V9J|1|CA|C|979
4V9J|1|CA|C|980
4V9J|1|CA|U|981
4V9J|1|CA|U|982
4V9J|1|CA|A|983
4V9J|1|CA|C|984
*
4V9J|1|CA|G|1221
4V9J|1|CA|G|1222
4V9J|1|CA|C|1223
4V9J|1|CA|G|1224
4V9J|1|CA|A|1225
Current chains
- Chain CA
- 16S ribosomal RNA
Nearby chains
- Chain CJ
- 30S ribosomal protein S10
- Chain CM
- 30S ribosomal protein S13
- Chain CN
- 30S ribosomal protein S14 type Z
- Chain CS
- 30S ribosomal protein S19
Coloring options: