J3_4V9J_020

3D structure

PDB id

4V9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.86 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

4V9J|1|CA|U|1212, 4V9J|1|CA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9J_020 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.2544

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84394.1

Basepair signature

cWW-tWH-F-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

4V9J|1|CA|C|990
4V9J|1|CA|U|991
4V9J|1|CA|U|992
4V9J|1|CA|G|993
*
4V9J|1|CA|C|1045
4V9J|1|CA|A|1046
4V9J|1|CA|G|1047
*
4V9J|1|CA|C|1210
4V9J|1|CA|U|1211
4V9J|1|CA|U|1212
4V9J|1|CA|A|1213
4V9J|1|CA|C|1214
4V9J|1|CA|G|1215

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CN

30S ribosomal protein S14 type Z

Chain CY

Elongation factor G