J3_4V9J_038

3D structure

PDB id

4V9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.86 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9J_038 not in the Motif Atlas

Homologous match to J3_6CZR_061

Geometric discrepancy: 0.1837

The information below is about J3_6CZR_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.3

Basepair signature

cWW-tSH-cSS-F-cWW-cSS-tWW-tHH-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

4V9J|1|AA|C|936
4V9J|1|AA|A|937
4V9J|1|AA|A|938
4V9J|1|AA|G|939
*
4V9J|1|AA|C|1344
4V9J|1|AA|U|1345
4V9J|1|AA|A|1346
4V9J|1|AA|G|1347
4V9J|1|AA|U|1348
4V9J|1|AA|A|1349
4V9J|1|AA|A|1350
*
4V9J|1|AA|U|1372
4V9J|1|AA|G|1373
4V9J|1|AA|A|1374
4V9J|1|AA|A|1375
4V9J|1|AA|U|1376
4V9J|1|AA|A|1377
4V9J|1|AA|C|1378
4V9J|1|AA|G|1379

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AI

30S ribosomal protein S9