J3_4V9J_044
3D structure
- PDB id
- 4V9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.86 Å
Loop
- Sequence
- CUCG*CGAUAGCGCACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 4V9J|1|BA|C|34, 4V9J|1|BA|U|448, 4V9J|1|BA|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V9J_044 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.1595
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
4V9J|1|BA|C|32
4V9J|1|BA|U|33
4V9J|1|BA|C|34
4V9J|1|BA|G|35
*
4V9J|1|BA|C|445
4V9J|1|BA|G|446
4V9J|1|BA|A|447
4V9J|1|BA|U|448
4V9J|1|BA|A|449
4V9J|1|BA|G|450
4V9J|1|BA|C|451
4V9J|1|BA|G|452
4V9J|1|BA|C|453
4V9J|1|BA|A|454
4V9J|1|BA|C|455
4V9J|1|BA|C|456
4V9J|1|BA|A|457
4V9J|1|BA|G|458
4V9J|1|BA|U|459
4V9J|1|BA|A|460
4V9J|1|BA|C|461
*
4V9J|1|BA|G|468
4V9J|1|BA|G|469
4V9J|1|BA|A|470
4V9J|1|BA|A|471
4V9J|1|BA|A|472
4V9J|1|BA|G|473
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain B7
- 50S ribosomal protein L34
- Chain BF
- 50S ribosomal protein L4
- Chain BU
- 50S ribosomal protein L20
- Chain BX
- 50S ribosomal protein L23
Coloring options: