J3_4V9J_056
3D structure
- PDB id
- 4V9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.86 Å
Loop
- Sequence
- UG*CGCCGAUGG*CAG
- Length
- 14 nucleotides
- Bulged bases
- 4V9J|1|CA|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V9J_056 not in the Motif Atlas
- Homologous match to J3_6CZR_017
- Geometric discrepancy: 0.2767
- The information below is about J3_6CZR_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.3
- Basepair signature
- cWW-F-cWW-F-F-tWW-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
4V9J|1|CA|U|672
4V9J|1|CA|G|673
*
4V9J|1|CA|C|717
4V9J|1|CA|G|718
4V9J|1|CA|C|719
4V9J|1|CA|C|720
4V9J|1|CA|G|721
4V9J|1|CA|A|722
4V9J|1|CA|U|723
4V9J|1|CA|G|724
4V9J|1|CA|G|725
*
4V9J|1|CA|C|732
4V9J|1|CA|A|733
4V9J|1|CA|G|734
Current chains
- Chain CA
- 16S ribosomal RNA
Nearby chains
- Chain CF
- 30S ribosomal protein S6
- Chain CK
- 30S ribosomal protein S11
- Chain CO
- 30S ribosomal protein S15
- Chain CR
- 30S ribosomal protein S18
- Chain CV
- messenger RNA
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