J3_4V9K_051

3D structure

PDB id

4V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

4V9K|1|BA|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9K_051 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.2095

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

4V9K|1|BA|G|1344
4V9K|1|BA|C|1345
4V9K|1|BA|G|1346
4V9K|1|BA|G|1347
4V9K|1|BA|G|1348
4V9K|1|BA|A|1349
4V9K|1|BA|C|1350
*
4V9K|1|BA|G|1381
4V9K|1|BA|G|1382
4V9K|1|BA|C|1383
4V9K|1|BA|A|1384
4V9K|1|BA|G|1385
*
4V9K|1|BA|C|1402
4V9K|1|BA|C|1403

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L34

Chain BX

50S ribosomal protein L23