J3_4V9K_056

3D structure

PDB id

4V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

4V9K|1|CA|C|48, 4V9K|1|CA|A|50, 4V9K|1|CA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9K_056 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.1216

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4V9K|1|CA|G|46
4V9K|1|CA|C|47
4V9K|1|CA|C|48
4V9K|1|CA|U|49
4V9K|1|CA|A|50
4V9K|1|CA|A|51
4V9K|1|CA|G|52
*
4V9K|1|CA|U|359
4V9K|1|CA|A|360
4V9K|1|CA|G|361
4V9K|1|CA|G|362
4V9K|1|CA|A|363
4V9K|1|CA|A|364
4V9K|1|CA|U|365
4V9K|1|CA|C|366
4V9K|1|CA|U|367
*
4V9K|1|CA|A|393
4V9K|1|CA|G|394
4V9K|1|CA|C|395

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CL

30S ribosomal protein S12

Chain CP

30S ribosomal protein S16

Chain CY

Elongation factor G