J3_4V9L_002

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9L_002 not in the Motif Atlas

Homologous match to J3_5J7L_005

Geometric discrepancy: 0.1736

The information below is about J3_5J7L_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4V9L|1|AA|U|943
4V9L|1|AA|G|944
4V9L|1|AA|G|945
4V9L|1|AA|A|946
*
4V9L|1|AA|U|1235
4V9L|1|AA|A|1236
4V9L|1|AA|C|1237
*
4V9L|1|AA|G|1337
4V9L|1|AA|G|1338
4V9L|1|AA|A|1339
4V9L|1|AA|A|1340

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AI

30S ribosomal protein S9

Chain AM

30S ribosomal protein S13

Chain AW

Transfer RNA; tRNA