J3_4V9L_009

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

4V9L|1|BA|G|686, 4V9L|1|BA|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9L_009 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1469

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4V9L|1|BA|C|683
4V9L|1|BA|G|684
4V9L|1|BA|A|685
4V9L|1|BA|G|686
4V9L|1|BA|C|687
4V9L|1|BA|U|688
4V9L|1|BA|A|689
*
4V9L|1|BA|U|773
4V9L|1|BA|A|774
4V9L|1|BA|G|775
*
4V9L|1|BA|C|791
4V9L|1|BA|G|792
4V9L|1|BA|A|793
4V9L|1|BA|G|794

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L34

Chain BD

50S ribosomal protein L2