J3_4V9L_062

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

4V9L|1|DA|C|34, 4V9L|1|DA|U|448, 4V9L|1|DA|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9L|1|DA|C|32
4V9L|1|DA|U|33
4V9L|1|DA|C|34
4V9L|1|DA|G|35
*
4V9L|1|DA|C|445
4V9L|1|DA|G|446
4V9L|1|DA|A|447
4V9L|1|DA|U|448
4V9L|1|DA|A|449
4V9L|1|DA|G|450
4V9L|1|DA|C|451
4V9L|1|DA|G|452
4V9L|1|DA|C|453
4V9L|1|DA|A|454
4V9L|1|DA|C|455
4V9L|1|DA|C|456
4V9L|1|DA|A|457
4V9L|1|DA|G|458
4V9L|1|DA|U|459
4V9L|1|DA|A|460
4V9L|1|DA|C|461
*
4V9L|1|DA|G|468
4V9L|1|DA|G|469
4V9L|1|DA|A|470
4V9L|1|DA|A|471
4V9L|1|DA|A|472
4V9L|1|DA|G|473

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D7

50S ribosomal protein L34

Chain DF

50S ribosomal protein L4

Chain DU

50S ribosomal protein L20

Chain DX

50S ribosomal protein L23