J3_4V9N_009

3D structure

PDB id

4V9N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

4V9N|1|BA|G|686, 4V9N|1|BA|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9N_009 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.1071

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4V9N|1|BA|C|683
4V9N|1|BA|G|684
4V9N|1|BA|A|685
4V9N|1|BA|G|686
4V9N|1|BA|C|687
4V9N|1|BA|U|688
4V9N|1|BA|A|689
*
4V9N|1|BA|U|773
4V9N|1|BA|A|774
4V9N|1|BA|G|775
*
4V9N|1|BA|C|791
4V9N|1|BA|G|792
4V9N|1|BA|A|793
4V9N|1|BA|G|794

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L34

Chain BD

50S ribosomal protein L2