J3_4V9N_066

3D structure

PDB id

4V9N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4V9N|1|DA|U|504, 4V9N|1|DA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9N_066 not in the Motif Atlas

Homologous match to J3_4WF9_011

Geometric discrepancy: 0.2327

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

4V9N|1|DA|G|30
4V9N|1|DA|C|31
*
4V9N|1|DA|G|474
4V9N|1|DA|U|475
4V9N|1|DA|G|476
4V9N|1|DA|A|477
4V9N|1|DA|A|478
4V9N|1|DA|A|479
4V9N|1|DA|A|480
4V9N|1|DA|G|481
4V9N|1|DA|A|482
4V9N|1|DA|A|483
4V9N|1|DA|C|484
*
4V9N|1|DA|G|496
4V9N|1|DA|A|497
4V9N|1|DA|G|498
4V9N|1|DA|U|499
4V9N|1|DA|G|500
4V9N|1|DA|A|501
4V9N|1|DA|A|502
4V9N|1|DA|A|503
4V9N|1|DA|U|504
4V9N|1|DA|A|505
4V9N|1|DA|G|506
4V9N|1|DA|A|507
4V9N|1|DA|G|508
4V9N|1|DA|C|509
4V9N|1|DA|C|510

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DU

50S ribosomal protein L20

Chain DW

50S ribosomal protein L22

Chain DY

50S ribosomal protein L24