J3_4V9O_095

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

4V9O|1|CA|A|504, 4V9O|1|CA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9O_095 not in the Motif Atlas

Homologous match to J3_5J7L_066

Geometric discrepancy: 0.12

The information below is about J3_5J7L_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V9O|1|CA|G|30
4V9O|1|CA|C|31
*
4V9O|1|CA|G|474
4V9O|1|CA|C|475
4V9O|1|CA|G|476
4V9O|1|CA|A|477
4V9O|1|CA|A|478
4V9O|1|CA|A|479
4V9O|1|CA|A|480
4V9O|1|CA|G|481
4V9O|1|CA|A|482
4V9O|1|CA|A|483
4V9O|1|CA|C|484
*
4V9O|1|CA|G|496
4V9O|1|CA|A|497
4V9O|1|CA|G|498
4V9O|1|CA|U|499
4V9O|1|CA|G|500
4V9O|1|CA|A|501
4V9O|1|CA|A|502
4V9O|1|CA|A|503
4V9O|1|CA|A|504
4V9O|1|CA|A|505
4V9O|1|CA|G|506
4V9O|1|CA|A|507
4V9O|1|CA|A|508
4V9O|1|CA|C|509
4V9O|1|CA|C|510

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CQ

50S ribosomal protein L20

Chain CS

50S ribosomal protein L22

Chain CU

50S ribosomal protein L24